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Mitochondrial atlas finds 33 protein families that pathogens share and humans lack

Vamsi Mootha's team mapped mitochondrial proteins in six organisms and found 33 families conserved in eukaryotic pathogens but absent in humans. The families are candidate drug targets, and the same data have stirred a debate over the origin of the mitochondrion.

The Scientist · Science desk

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Illustration accompanying Mitochondrial atlas finds 33 protein families that pathogens share and humans lack
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Many mapped families are missing from databases Pooled mitochondrial protein families, the share not recorded in Pfam, and families an AI model predicted from the genomes of 203 eukaryotes.

Three figures: 3,199 mitochondrial protein families pooled from six organisms plus humans and yeasts; around 43% of them not recorded in the Pfam database; and 1,420 families not in current datasets, predicted by an AI model from the genomes of 203 eukaryotes.

Many mapped families are missing from databases
FigureValueNoteClaim
Families pooled from six maps, humans and yeasts3,199 families9
Not in Pfam, around43%10
AI-predicted, unrecorded1,420 families16

What happened

  • The results appear in nine papers published on 1 October in Cell, Cell Press Blue, Molecular Cell and Current Biology.
  • Pooling the six new maps with those for humans and yeast gave 8,619 mitochondrial proteins grouped into 3,199 families.
  • An AI model scanned the genomes of 203 eukaryotes for likely mitochondrial proteins and flagged 1,420 families missing from current datasets.

Why it matters

  • What's now possible capability A shortlist of 33 families gives drug designers parasite proteins to aim at that have no human counterpart.
  • What it limits constraint Absence from humans is the first filter for a target. Whether a parasite needs the protein to live takes a separate experiment.
  • What it limits constraint The 1,420 new families are predictions from genomes, so they are leads to check and not yet measured mitochondrial proteins.

Set against the 3,199 families in the pooled collection, 33 is about 1% [18]. Mootha, who led the project, said such proteins can be "ideal drug targets" for precise therapies that would act on parasite proteins but not human ones [12].

Most of what is known about mitochondria comes from human and yeast studies, according to Mootha, a mitochondrial biologist at the Howard Hughes Medical Institute in Boston [3]. The new maps add five single-celled parasites and one plant [1]. About 43% of the 3,199 families are not recorded in Pfam, a large protein database [10]. That works out to roughly 1,400 families [20].

Giardia lamblia is the example Nature walks through. The parasite infects about 280 million people worldwide each year and causes diarrhoea [4]. Its mitochondrion-like organelles are hard to study because it lives in the gut of other organisms, without oxygen, said Pavel Doležal, a cell biologist at Charles University in Prague [5]. Of the 59 proteins the team found, 34 have no known function, about 58% [19]. Doležal called that surprising because "it means that there is some new metabolism that we don't know about. And it was overlooked" [8].

The papers do not test whether any of the 33 families is essential to a parasite. We think essentiality is the test of whether these are drug targets, since a protein missing from humans is only useful if the parasite cannot do without it.

On origins, the shared ground is narrow. Researchers agree that mitochondria emerged two billion years ago, when an archaeal cell engulfed a bacterium [13]. It remains unclear whether the mitochondrion arose early or late in eukaryotic evolution [14]. Mootha's team mapped the lineage of the mitoproteomes onto a phylogenetic tree to address that [15]. Nature says the work has stirred the long-running debate [17]. The text of Nature's report cuts off before it says what the tree analysis found about timing.

What to watch

  • Whether any of the 33 families is tested for essentiality in a parasite, such as Giardia or the agents of malaria and sleeping sickness.
  • What the phylogenetic-tree analysis concludes about early versus late origin of the mitochondrion, and how other evolutionary biologists respond.
  • Whether the 1,420 AI-predicted families are confirmed as mitochondrial by direct measurement.

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  1. [1]

    Scientists have mapped the proteins that make up mitochondria in six organisms, five single-celled parasites and one plant, spanning the eukaryotic tree of life.

    Reported SupportedView cited source
  2. [2]

    The findings are described in nine papers published in Cell, Cell Press Blue, Molecular Cell and Current Biology on 1 October.

    Reported SupportedView cited source
  3. [3]

    Most of what is known about mitochondria comes from human and yeast studies, according to Vamsi Mootha, a mitochondrial biologist at the Howard Hughes Medical Institute in Boston, Massachusetts, who led the 'mitoproteome' catalogues project.

    Reported SupportedView cited source

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Sources

1 independent publisher whose own reporting we read for this story.

  1. nature.com

    1 article · October 15, 2026

    Unprecedented atlas explores mitochondria across the tree of life

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