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A NASA-backed study of 52 ISS crew members found gut bacteria switching to protein fermentation within weeks of launch, producing compounds the authors tie to kidney and cognitive harm.
The Scientist · Science desk

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A NASA-backed study published June 29 in Nature Communications put a measurable chemical signature under one of spaceflight's oldest nuisances, analyzing more than 400 blood samples from 52 astronauts who each spent more than two months aboard the International Space Station between 2006 and 2018 [1][2]. The result matters less for the constipation than for what the mechanism generates: metabolites that the authors say could climb to harmful levels on a Mars-duration flight [10].
The problem itself is not new. Difficulty with what the crews euphemistically call number two showed up as soon as people started living in orbit, and while it is an inconvenience for most astronauts, some need laxatives, which are routinely stocked on missions including Artemis II [11]. NASA lists constipation alongside bloating, indigestion and acid reflux as recurring digestive complaints [12]. Microgravity has long been the presumed culprit, but the hypothesis was hard to test, and the knock-on effects of chronic constipation harder still to characterize [13].
The blood work narrows it. The team screened for metabolites and flagged 40 compounds, with the most informative ones produced by gut bacteria breaking down protein in the intestines [3]. According to first author Giorgia La Barbera of the University of Copenhagen, the samples show gut bacteria fermenting protein more than usual within weeks of arrival in space, a shift that can persist until the crew is back on Earth [4]. Protein fermentation is what happens when gut microbes run short of their preferred substrate, complex carbohydrates such as fiber, and switch to protein instead [5].
The proposed cause is mechanical rather than exotic. Co-author Henrik Roager says the lack of gravity probably slows food's passage through the intestine, giving bacteria more time to strip out the fiber before turning to protein, and that the slower transit can help explain the constipation [6]. That causal step is stated as probable, not directly measured by the blood panel. Diet was checked as an alternative: altered caffeine, fish and fat intake may play a role, but accounts for less than a third of the observed metabolite changes, which the researchers say leaves microgravity as the primary driver [7]. Put the other way, more than two thirds of the shift is not explained by what the crews ate [16].
The downstream finding is the operationally awkward one. Co-author Lars Ove Dragsted says protein fermentation products are often associated with kidney damage and possible effects on mood and concentration [8], and in the gut they have been linked to inflammation and a weakened intestinal lining [9]. Over a station rotation, compounds such as ammonia and hydrogen sulfide likely pose limited risk; over a flight to Mars, the authors warn they could reach harmful levels [10].
Worth watching: whether the 40-compound panel migrates from research tool to routine crew monitoring, and whether food system design responds with more fermentable fiber rather than more laxatives [3][11]. A dietary lever that explains under a third of the effect is a weak lever for a multi-year mission [7].
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Ranked by verification strength, evidence, and original report placement.
Over short periods, potentially harmful metabolites including ammonia and hydrogen sulfide likely pose limited risks to astronauts' overall health, but the study authors said long-duration spaceflights could cause these compounds to rise to harmful levels.
A NASA-backed study published June 29 in the journal Nature Communications analyzed more than 400 blood samples from 52 astronauts.
Each of the 52 astronauts spent more than two months at a time living aboard the International Space Station, with stays taking place between 2006 and 2018.
The team looked for specific metabolites in the blood samples and identified 40 such compounds; the most instructive were those produced by gut bacteria that help break down proteins in the intestines.
Study first author Giorgia La Barbera, an associate professor in the University of Copenhagen's Department of Nutrition, Exercise and Sports, said blood samples show gut bacteria beginning to ferment protein to a greater extent than usual within weeks after astronauts arrive in space, and that this can persist until they are back on Earth.
Protein fermentation occurs when gut bacteria break down proteins instead of their usual preferred food group, complex carbohydrates such as fiber.
Evidence-backed comparisons of source perspectives and observed adoption signals. Read the methodology
Which Builder, Operator, and Investor concerns the observed source mix emphasized—not a truth score.
Evidence, demonstrated adoption, hype gap, incentives, and confidence are assessed independently, each on its own current evidence. How these are measured.
Peer-reviewed cohort study, relayed second-hand
The underlying work is a longitudinal, peer-reviewed Nature Communications study with a substantial cohort for spaceflight research (400+ samples, 52 astronauts, 2006-2018) and a cited DOI, which is strong for this domain. But the cluster contains a single article that works from the research team's institutional statements, reports no effect sizes, intervals or model detail, credits its central quantitative figure to a sister site, and quotes no independent expert. The causal mechanism is hedged in the source itself ('probably causes food to move more slowly').
Existing symptom management, no countermeasure uptake
What is documented is pre-existing operational practice, not adoption of this finding: laxatives are already routinely stocked on missions including Artemis II, and NASA already recognises constipation among astronaut digestive issues. None of the study's proposed countermeasures -- fiber-rich diets, probiotics, peristalsis promotion -- is reported as adopted, trialled or scheduled by any programme, and the finding is weeks old at publication time.
Certainty and Mars risk framed ahead of the data
The framing ('scientists finally know', 'hidden risk of long-haul spaceflight') asserts settled causation and a novel danger, while the reported evidence is an observational metabolomic association plus a hedged transit-time mechanism. The harm pathway is doubly extrapolated: fermentation products are 'often associated' with kidney, mood and focus effects generally, and the harmful-level scenario applies to long-duration missions the study did not observe -- the source itself concedes it covered only brief ISS stints. Offsetting the gap, the cohort and biomarker claims are specific and the article does surface its own limitations and the diet confounder.
Funder-and-press-release channel, mild in-house cross-promotion
The study is NASA-backed and the human quotes all come from a single institutional statement by the University of Copenhagen authors, who have a direct interest in the significance of their own result and in the case for countermeasure research. The publisher amplifies a sister site's reporting for the diet figure and uses high-certainty consumer-facing framing that rewards traffic. There is no evidence of commercial product promotion, undisclosed sponsorship, or vendor involvement, which keeps this mid-range rather than high.
Credible underlying paper, single-outlet cluster
Confidence in the core descriptive facts is fair because they trace to a named, DOI-identified peer-reviewed paper with a specified cohort. It is held down by the cluster having exactly one publisher and one article, all attribution running through one institutional statement, no independent expert or replication, and the most consequential assertions being forecasts about mission durations and gravity regimes not studied.
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