Science1 publisher2 min readPublished
An evolved enzyme makes only the TB-active form of an oxazolidinone building block
Frances Arnold's Caltech lab reports in Nature an enzyme, improved by directed evolution, that builds the (S) stereocenter directly, so a step that usually discards half its output no longer has to. It is still proof of concept.
The Scientist · Science desk

What happened
- Ziqi Li and colleagues in Frances Arnold's Caltech lab reported an enzymatic route to the pharmaceutical building block 5-(S)-aminomethyl oxazolidinone in Nature on Sept. 23.
- The usual synthesis of oxazolidinones produces both mirror-image forms, and because only the (S) version kills bacteria, half of every batch cannot be used.
- To find a catalyst that sets the (S) center directly, the group screened a few hundred enzymes from a freezer collection of more than 5,000 and got a single usable starting point.
- The antibiotic class already shows promise against multidrug- and extensively drug-resistant TB, and the team went after its manufacturing cost, the barrier the researchers name for poorer countries.
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Why it matters
- cost Anyone modelling a price drop from this chemistry has one step's worth of headroom to work with, a factor of two in usable intermediate, not a saving on a finished course of treatment.
- capability Process chemists now have an option that sets the stereocenter during bond formation, and it is claimed for discovery-stage oxazolidinones as well as clinically relevant ones.
- constraint Until someone runs the enzyme at production scale, a procurement team cannot price the saving; Li puts that demonstration a very long way off.
- decision The next move belongs to pharmaceutical manufacturers, whom Li is asking to refine the method, because scaling it is industry's job.
Directed evolution is a screening problem before it is a chemistry problem. Mutations go into the gene that encodes an enzyme, thousands of variants are made and tested for the trait you want, the best performers are kept, and the cycle runs again [13]. The method dates to the early 1990s and won Arnold the 2018 Nobel Prize in Chemistry [14].
The loop started from something weak. Reading "a few hundred" as about 300, the single hit came out of roughly 6 percent of the freezer collection [23]. "It wasn't necessarily a very good starting point, but we iteratively improved this enzyme to ultimately get to a final point where it's high yield and high selectivity," Li said [12].
Both mirror images hold the same atoms, arranged differently at one stereogenic center, and that arrangement sets the molecule's shape, which decides how it meets proteins and other biomolecules in the body [7]. Building the center correctly from the start, enzymatically, instead of making a mixture and losing one half [10], is worth at most a factor of two in usable intermediate at that step [22]. The paper's listed title describes the chemistry as a biocatalytic aziridination [24].
The drug does the same thing to a bacterium either way. The compound is the same compound, and the route to it wastes less. The cost claim attached to it is qualitative: better cost efficiency and less waste, across clinically relevant and discovery-stage versions of the compound [17]. "But with these tools, we can make enzymes that do so much more efficiently and with little waste, reducing the cost of producing what we need for our daily lives," said Arnold, who directs the Donna and Benjamin M. Rosen Bioengineering Center at Caltech [15][16].
More than 80% of TB cases occur in low- and middle-income nations, where drug-resistant strains are on the rise and the cost of medicines is a burden [2]. An enzyme that stops throwing away half of one step's output works on that cost at the manufacturing step, and the intermediate here has uses beyond TB drugs [6]. Li is direct about the distance between this result and a supply chain. "We solved the first step to prove that the enzymes can make these molecules," Li said [19].
What to watch
- Whether any manufacturer reports the evolved enzyme's performance at kilogram scale, with enzyme loading and turnover figures attached.
- Whether the route is run head to head against current synthesis on cost of goods for a clinically used oxazolidinone.
- Whether the group or a licensee extends the same aziridination chemistry to other 5-(S)-aminomethyl oxazolidinone products.