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An internal latch lets one pufferfish taste receptor accept amino acids of either handedness
A University of Osaka team solved the first crystal structure of the pufferfish Tas1r1/Tas1r3 binding domain and found bridges between subdomains that keep the clamshell closed on an imperfect fit. Flavor design sits several steps downstream.
The Scientist · Science desk

What happened
- A University of Osaka-led team determined the first 3D crystal structure of the ligand-binding domain of the pufferfish umami-type receptor Tas1r1/Tas1r3, publishing in the Proceedings of the National Academy of Sciences.
- The pufferfish receptor binds and responds to both L-amino acids, usually tasted as savory, and D-amino acids, usually tasted as sweet.
- Senior author Atsuko Yamashita attributes the trait to the fish's diet of mollusks and crustaceans, which carry high concentrations of D-amino acids.
- The team says the work should feed into understanding of taste perception and into the design of new umami flavors for people and feed for livestock and fisheries.
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Why it matters
- capability Atomic coordinates for a promiscuous taste receptor give protein engineers a specific set of contacts to try adding to an L-selective receptor, a test that had no structural starting point before.
- constraint Because the solved region stops at the ligand-binding domain, anyone designing a flavor compound off these coordinates still has to prove signaling in a cell assay rather than reading it off the model.
- decision Aquaculture feed formulators now have a receptor-level reason to screen D-amino acids as palatability additives for marine species, a question no human-receptor assay can settle.
The latch is a set of contacts between subdomains inside the receptor's extracellular binding region. In a class C G protein-coupled receptor, that region is shaped like a clamshell: a matching nutrient drops into the cleft and the clamp closes, and the closed state is what starts intracellular signaling, while a ligand of the wrong shape or the mirror-image chirality leaves the clamp open and the cascade quiet [6]. In the pufferfish receptor, bridges across the subdomains brace the cleft shut even when the fit is imperfect, holding the active conformation across a wide range of amino acids [7]. The team identified them from the crystal structure together with mutational analysis [7].
"Normally, a receptor is unable to bind to a molecule that is the wrong shape," senior author Atsuko Yamashita said [9].
In mammals the L-selective umami receptor is TAS1R1/TAS1R3, and the receptor that reads sugars and D-amino acids is TAS1R2/TAS1R3 [3]. The two pairings share the TAS1R3 subunit, and between them they split ligand classes that the single pufferfish Tas1r1/Tas1r3 pairing covers on its own [13]. The Osaka group describes that as a receptor expanding its range by acquiring intramolecular interactions that shift the conformational equilibrium toward the active state, with no new gene family required [8].
The crystal structure covers the ligand-binding domain, not the transmembrane part of the receptor that couples to a G protein [1]. How much signaling the latch mutants lost relative to wild type is in the paper; neither published summary reports it [14].
The evolutionary account is offered as an inference, and the authors say so. "We believe that the pufferfish's diet drives this molecular evolution," Yamashita said. "They eat a lot of mollusks and crustaceans, which contain high amounts of D-amino acids" [10]. The structure does not date the adaptation, and the sources report no comparison against fish with different diets [15].
The team expects the work to inform new umami flavors for humans and feed for livestock and fisheries [11]. The fisheries end is the nearer of the two: a fish receptor, fish ligands, and an outcome you can measure as feed intake. Designing a compound for human tongues runs through the human umami receptor, whose ligand recognition has stayed structurally obscure because purifying and stabilizing these fragile complexes in vitro has proved difficult [12].
What to watch
- Whether a full-length structure, including the transmembrane domain, shows how cleft closure reaches G protein coupling.
- Whether any group transplants the pufferfish latch contacts into a mammalian TAS1R1/TAS1R3 and gets a D-amino acid response, the direct test of engineerability.
- Whether feeding trials in farmed marine fish show D-amino acid supplementation changes intake.