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Science1 publisher3 min readPublished

Prior feast-and-famine speeds how fast single E. coli respond to an identical food pulse

A microfluidic experiment held the present identical and varied the past. That design is what separates a reaction from a memory. A mathematical model then placed that memory in ribosomes, though no one watched a ribosome directly.

The Scientist · Science desk

Photograph accompanying Prior feast-and-famine speeds how fast single E. coli respond to an identical food pulse
Photo: theconversation.com

What happened

  • A lab tracked tens of thousands of individual E. coli in a microfluidic device while switching their nutrient supply on and off at different rates, work published in the journal PRX Life.
  • A mathematical model placed that stored history in ribosomes, with fast-responding ones tracking present conditions and slow ones retaining the past across minutes to hours.
  • The same model's logic matches a gated recurrent neural network, in which a switch decides how much existing memory to keep and how much to overwrite as new information arrives.

Compiled by The ScientistSomething wrong?How this is made

Why it matters

  • constraint Ruling out every other component a model contains is weaker than ruling out every component a cell contains, so the ribosome address stays a hypothesis with a defined experiment attached rather than a result.
  • decision An assay that records only the concentration a culture currently sits in cannot detect this effect at all, which turns prior exposure schedule into something worth logging rather than randomising away.
  • cost Because readiness is paid for out of growth, how much history a lineage can afford to keep becomes a quantity with a currency, and one that should differ between a steady environment and a churning one.

The control is the part worth admiring. Both sets of cells met the same influx of food, and only their recent past differed: the ones that had just come through rapid feast-and-famine cycling adapted much faster than the ones arriving from steady conditions [3]. Because the immediate conditions were identical, the difference has to come from something the cells were carrying rather than something they were sensing [5]. That separation of history from stimulus is what earns the word learning under the definition the work uses, which asks only that past experience shape later behavior [15].

What is more provisional in the author's account in The Conversation is the address. The memory showed itself as changes in growth rate [16], and a mathematical model of the internal network that controls bacterial growth located the store in ribosomes, the machinery that sets how fast a cell grows [6]. The supporting line is that no other component the team tested in the model reproduced the behavior [7]. That is elimination inside a parts list. It does not exclude a slow-changing component nobody wrote into the model, and the account describes no direct measurement of fast and slow ribosome populations in the cells themselves.

The neural-network comparison is narrower than it sounds, and more interesting for being narrow. The claim is that this molecular system follows the same basic computational logic as a gated recurrent network, the architecture used on sequences such as speech and sensor data [9], where a gate decides how much existing memory to keep and how much to overwrite when new information arrives [10]. Gating was invented in machine learning to hold long-range information while staying plastic, and a bacterium faces that tradeoff in the flesh: adapt too readily and it is exposed when conditions turn, forget too readily and it cannot anticipate a threat that recurs [13]. The cell also carries a price the artificial version does not, since keeping readiness to adapt comes out of growth [11].

The account skips a magnitude. The gap between the two histories is given as much faster, with no ratio and no time constant [4], and the span of the memory, minutes to hours, comes from the fast and slow ribosome populations in the model rather than from a measured decay [8]. No drug appears in the experiment, either. Nutrient switching is the only perturbation described; the human gut, where nutrient levels rise and fall and antibiotic threats come and go, is the motivation for asking [12][17].

So the result I would defend is the history-dependence itself, which the identical-present design genuinely earns across tens of thousands of tracked cells [2]. The location of the store is a different matter: the model supplies it, but a measurement still has to confirm it.

What to watch

  • A direct measurement of fast and slow ribosome populations in cells with different nutrient histories, taken at the moment the food pulse arrives.
  • The same identical-present, different-past design run with an antibiotic dose instead of a nutrient pulse, scored on survival.
  • The effect sizes and memory time constants in the PRX Life paper itself, which the popular account leaves out.
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